!!AA_SCORING_MATRIX_RECT 1.0

BLOSUM35 amino acid substitution matrix.

                     February 20, 1996 14:54   ..

{
GAP_CREATE 13
GAP_EXTEND 5
}

      A    B    C    D    E     F    G    H    I    K     L    M    N    P    Q     R    S    T    V    W     X    Y    Z    * 
A     5   -1   -2   -1   -1    -2    0   -2   -1    0    -2    0   -1   -2    0    -1    1    0    0   -2     0   -1   -1   -5 
B    -1    5   -2    5    0    -2    0    0   -2    0    -2   -2    4   -1    0    -1    0   -1   -2   -3    -1   -2    0   -5 
C    -2   -2   15   -3   -1    -4   -3   -4   -4   -2    -2   -4   -1   -4   -3    -3   -3   -1   -2   -5    -2   -5   -2   -5 
D    -1    5   -3    8    2    -3   -2    0   -3   -1    -2   -3    1   -1   -1    -1   -1   -1   -2   -3    -1   -2    1   -5 
E    -1    0   -1    2    6    -3   -2   -1   -3    1    -1   -2   -1    0    2    -1    0   -1   -2   -1    -1   -1    5   -5 

F    -2   -2   -4   -3   -3     8   -3   -3    1   -1     2    0   -1   -4   -4    -1   -1   -1    1    1    -1    3   -3   -5 
G     0    0   -3   -2   -2    -3    7   -2   -3   -1    -3   -1    1   -2   -2    -2    1   -2   -3   -1    -1   -2   -2   -5 
H    -2    0   -4    0   -1    -3   -2   12   -3   -2    -2    1    1   -1   -1    -1   -1   -2   -4   -4    -1    0   -1   -5 
I    -1   -2   -4   -3   -3     1   -3   -3    5   -2     2    1   -1   -1   -2    -3   -2   -1    4   -1     0    0   -3   -5 
K     0    0   -2   -1    1    -1   -1   -2   -2    5    -2    0    0    0    0     2    0    0   -2    0     0   -1    1   -5 

L    -2   -2   -2   -2   -1     2   -3   -2    2   -2     5    3   -2   -3   -2    -2   -2    0    2    0     0    0   -2   -5 
M     0   -2   -4   -3   -2     0   -1    1    1    0     3    6   -1   -3   -1     0   -1    0    1    1     0    0   -2   -5 
N    -1    4   -1    1   -1    -1    1    1   -1    0    -2   -1    7   -2    1    -1    0    0   -2   -2     0   -2    0   -5 
P    -2   -1   -4   -1    0    -4   -2   -1   -1    0    -3   -3   -2   10    0    -2   -2    0   -3   -4    -1   -3    0   -5 
Q     0    0   -3   -1    2    -4   -2   -1   -2    0    -2   -1    1    0    7     2    0    0   -3   -1    -1    0    4   -5 

R    -1   -1   -3   -1   -1    -1   -2   -1   -3    2    -2    0   -1   -2    2     8   -1   -2   -1    0    -1    0    0   -5 
S     1    0   -3   -1    0    -1    1   -1   -2    0    -2   -1    0   -2    0    -1    4    2   -1   -2     0   -1    0   -5 
T     0   -1   -1   -1   -1    -1   -2   -2   -1    0     0    0    0    0    0    -2    2    5    1   -2     0   -2   -1   -5 
V     0   -2   -2   -2   -2     1   -3   -4    4   -2     2    1   -2   -3   -3    -1   -1    1    5   -2     0    0   -2   -5 
W    -2   -3   -5   -3   -1     1   -1   -4   -1    0     0    1   -2   -4   -1     0   -2   -2   -2   16    -1    3   -1   -5 

X     0   -1   -2   -1   -1    -1   -1   -1    0    0     0    0    0   -1   -1    -1    0    0    0   -1    -1   -1    0   -5 
Y    -1   -2   -5   -2   -1     3   -2    0    0   -1     0    0   -2   -3    0     0   -1   -2    0    3    -1    8   -1   -5 
Z    -1    0   -2    1    5    -3   -2   -1   -3    1    -2   -2    0    0    4     0    0   -1   -2   -1     0   -1    4   -5 
*    -5   -5   -5   -5   -5    -5   -5   -5   -5   -5    -5   -5   -5   -5   -5    -5   -5   -5   -5   -5    -5   -5   -5    1